About Bioinformatics at WV-INBRE

Marshall University Bioinformatics Core Facility

The mission of the WV-INBRE Bioinformatics Core Facility is to provide bioinformatics support and training for researchers in the WV-INBRE network. We have established analysis pipelines for expression profiling by RNA-Seq, using DESeq2, and variant calling for whole exome and whole genome data via GATK. Pipelines for other sequencing data analyses can be developed as needed.

Support for WV-INBRE researchers includes submission of data sets to public repositories, documentation of all methods used, contributions to manuscript methods and results sections preparation, and grant applications. 

The WV-INBRE bioinformatics core facility maintains a GitHub repository.

Contact Dr. Jim Denvir (denvir@marshall.edu) for more details.